Coverage for src/CSET/operators/__init__.py: 100%
89 statements
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1# © Crown copyright, Met Office (2022-2026) and CSET contributors.
2#
3# Licensed under the Apache License, Version 2.0 (the "License");
4# you may not use this file except in compliance with the License.
5# You may obtain a copy of the License at
6#
7# http://www.apache.org/licenses/LICENSE-2.0
8#
9# Unless required by applicable law or agreed to in writing, software
10# distributed under the License is distributed on an "AS IS" BASIS,
11# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12# See the License for the specific language governing permissions and
13# limitations under the License.
15"""Subpackage contains all of CSET's operators."""
17import inspect
18import json
19import logging
20import os
21import zipfile
22from pathlib import Path
24from iris import FUTURE
26# Import operators here so they are exported for use by recipes.
27import CSET.operators
28from CSET.operators import (
29 ageofair,
30 aggregate,
31 aviation,
32 collapse,
33 constraints,
34 convection,
35 dfss,
36 ensembles,
37 feature,
38 filters,
39 fluxes,
40 humidity,
41 imageprocessing,
42 mesoscale,
43 misc,
44 plot,
45 power_spectrum,
46 precipitation,
47 pressure,
48 read,
49 regrid,
50 scoreswrappers,
51 temperature,
52 transect,
53 wind,
54 write,
55)
57# Exported operators & functions to use elsewhere.
58__all__ = [
59 "ageofair",
60 "aggregate",
61 "aviation",
62 "collapse",
63 "constraints",
64 "convection",
65 "ensembles",
66 "execute_recipe",
67 "feature",
68 "filters",
69 "fluxes",
70 "humidity",
71 "get_operator",
72 "imageprocessing",
73 "mesoscale",
74 "misc",
75 "plot",
76 "power_spectrum",
77 "precipitation",
78 "pressure",
79 "read",
80 "regrid",
81 "temperature",
82 "scoreswrappers",
83 "transect",
84 "wind",
85 "write",
86 "dfss",
87]
89# Stop iris giving a warning whenever it loads something.
90FUTURE.datum_support = True
91# Stop iris giving a warning whenever it saves something.
92FUTURE.save_split_attrs = True
93# Accept microsecond precision in iris times.
94FUTURE.date_microseconds = True
97def get_operator(name: str):
98 """Get an operator by its name.
100 Parameters
101 ----------
102 name: str
103 The name of the desired operator.
105 Returns
106 -------
107 function
108 The named operator.
110 Raises
111 ------
112 ValueError
113 If name is not an operator.
115 Examples
116 --------
117 >>> CSET.operators.get_operator("read.read_cubes")
118 <function read_cubes at 0x7fcf9353c8b0>
119 """
120 logging.debug("get_operator(%s)", name)
121 try:
122 name_sections = name.split(".")
123 operator = CSET.operators
124 for section in name_sections:
125 operator = getattr(operator, section)
126 if callable(operator):
127 return operator
128 else:
129 raise AttributeError
130 except (AttributeError, TypeError) as err:
131 raise ValueError(f"Unknown operator: {name}") from err
134def _write_metadata(recipe: dict):
135 """Write a meta.json file in the CWD."""
136 metadata = recipe.copy()
137 # Remove steps, as not needed, and might contain non-serialisable types.
138 metadata.pop("steps", None)
139 # To remove long variable names with suffix
140 if "title" in metadata:
141 metadata["title"] = metadata["title"].replace("_for_climate_averaging", "")
142 metadata["title"] = metadata["title"].replace("_radiative_timestep", "")
143 metadata["title"] = metadata["title"].replace("_maximum_random_overlap", "")
144 with open("meta.json", "wt", encoding="UTF-8") as fp:
145 json.dump(metadata, fp, indent=2)
148def _step_parser(step: dict, step_input: any) -> str:
149 """Execute a recipe step, recursively executing any sub-steps."""
150 logging.debug("Executing step: %s", step)
151 kwargs = {}
152 for key in step.keys():
153 if key == "operator":
154 operator = get_operator(step["operator"])
155 logging.info("operator: %s", step["operator"])
156 elif isinstance(step[key], dict) and "operator" in step[key]:
157 logging.debug("Recursing into argument: %s", key)
158 kwargs[key] = _step_parser(step[key], step_input)
159 else:
160 kwargs[key] = step[key]
161 logging.debug("args: %s", kwargs)
162 logging.debug("step_input: %s", step_input)
163 # If first argument of operator is explicitly defined, use that rather
164 # than step_input. This is known through introspection of the operator.
165 first_arg = next(iter(inspect.signature(operator).parameters.keys()))
166 logging.debug("first_arg: %s", first_arg)
167 if first_arg not in kwargs:
168 logging.debug("first_arg not in kwargs, using step_input.")
169 return operator(step_input, **kwargs)
170 else:
171 logging.debug("first_arg in kwargs.")
172 return operator(**kwargs)
175def create_diagnostic_archive():
176 """Create archive for easy download of plots and data."""
177 output_directory: Path = Path.cwd()
178 archive_path = output_directory / "diagnostic.zip"
179 with zipfile.ZipFile(
180 archive_path, "w", compression=zipfile.ZIP_DEFLATED
181 ) as archive:
182 for file in output_directory.rglob("*"):
183 # Check the archive doesn't add itself.
184 if not file.samefile(archive_path):
185 archive.write(file, arcname=file.relative_to(output_directory))
188def execute_recipe(
189 recipe: dict,
190 output_directory: Path,
191 style_file: Path = None,
192 plot_resolution: int = None,
193 skip_write: bool = None,
194) -> None:
195 """Parse and executes the steps from a recipe file.
197 Parameters
198 ----------
199 recipe: dict
200 Parsed recipe.
201 output_directory: Path
202 Pathlike indicating desired location of output.
203 style_file: Path, optional
204 Path to a style file.
205 plot_resolution: int, optional
206 Resolution of plots in dpi.
207 skip_write: bool, optional
208 Skip saving processed output alongside plots.
210 Raises
211 ------
212 FileNotFoundError
213 The recipe or input file cannot be found.
214 FileExistsError
215 The output directory as actually a file.
216 ValueError
217 The recipe is not well formed.
218 TypeError
219 The provided recipe is not a stream or Path.
220 """
221 # Create output directory.
222 try:
223 output_directory.mkdir(parents=True, exist_ok=True)
224 except (FileExistsError, NotADirectoryError) as err:
225 logging.error("Output directory is a file. %s", output_directory)
226 raise err
227 steps = recipe["steps"]
229 # Execute the steps in a recipe.
230 original_working_directory = Path.cwd()
231 try:
232 os.chdir(output_directory)
233 logger = logging.getLogger(__name__)
234 diagnostic_log = logging.FileHandler(
235 filename="CSET.log", mode="w", encoding="UTF-8"
236 )
237 diagnostic_log.setFormatter(
238 logging.Formatter("%(asctime)s %(name)s %(levelname)s %(message)s")
239 )
240 logger.addHandler(diagnostic_log)
241 # Create metadata file used by some steps.
242 if style_file:
243 recipe["style_file_path"] = str(style_file)
244 if plot_resolution:
245 recipe["plot_resolution"] = plot_resolution
246 if skip_write:
247 recipe["skip_write"] = skip_write
248 _write_metadata(recipe)
250 # Execute the recipe.
251 step_input = None
252 for step in steps:
253 step_input = _step_parser(step, step_input)
254 logger.info("Recipe output:\n%s", step_input)
256 logger.info("Creating diagnostic archive.")
257 create_diagnostic_archive()
258 finally:
259 os.chdir(original_working_directory)